Antigen

Antigen Class

TFs and others

Antigen

IRF3

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

dev stage

child

cell line

SK-N-SH

sex

female

sample type

immortalized cell line

donor ID

ENCDO000ABD

age

4 year

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

26827601

Reads aligned (%)

95.5

Duplicates removed (%)

10.1

Number of peaks

2016 (qval < 1E-05)

hg19

Number of total reads

26827601

Reads aligned (%)

94.7

Duplicates removed (%)

11.2

Number of peaks

1959 (qval < 1E-05)