Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF3

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

dev stage
child
cell line
SK-N-SH
sex
female
sample type
immortalized cell line
donor ID
ENCDO000ABD
age
4 year
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
26827601
Reads aligned (%)
95.5
Duplicates removed (%)
10.1
Number of peaks
2016 (qval < 1E-05)

hg19

Number of total reads
26827601
Reads aligned (%)
94.7
Duplicates removed (%)
11.2
Number of peaks
1959 (qval < 1E-05)

Base call quality data from DBCLS SRA